In today's game, the Colts used all three of their TOs at the end of the 3rd quarter. It seems the coaches thought it was the 4th quarter already and were trying to preserve time.

Yeah, that really puzzled me. You should have seen me beating my desk and cussing my computer screen!

What were your hurry up settings set to?

Even if he was in hurry up, he shouldn't have taken those TOs. I'm pretty sure the engine somehow confused the end of the 3rd quarter with the end of the 4th.

Yes, that is my suspicion as well. I just wanted to verify that he was in hurry up to be sure that is the logic that needs to be looked at.

That was indeed what it was - the timeout logic did not consider the quarter when in hurry up. I have just pushed a patch that should fix it to all leagues.